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Below is an alphabetical a list of the algorithms created so far from each CNS CIShell-powered tool. There are two lists, one organizes the algorithms by their function in the tools and the other organizes the algorithms alphabetically. Some pages are currently somewhat sparse, as of March 2011.
If you would like to view an index of algorithms in a particular CNS CIShell-powered tool, see the Sci2 Algorithm Index, the NWB Manual, or the EpiC Manual.
Source code for these algorithms is browsable in the CNS Center repository, see Document & Developer Resources (direct link to repository is currently down. Should be available soon as of March 2011).
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This page is currently undergoing a re-organization to group algorithms according to the functions they serve in their respective tools. |
Algorithms organized by function
Data Preparation
- Remove ISI Duplicate Records
- Remove Rows with Multitudinous Fields
- Extract Directed Network
- Extract Bipartite Network
- Extract Paper Citation Network
- Extract Author Paper Network
- Extract Co-Occurrence Network
- Extract Word Co-Occurrence Network
- Extract Co-Author Network
- Extract Reference Co-Occurrence (Bibliographic Coupling) Network
- Extract Document Co-Citation Network
- Detect Duplicate Nodes
- Update Network by Merging Nodes
- Convert to Generic Publication
Database
ISI
- Merge Identical ISI People
- Suggest ISI People Merges
- Merge Document Sources
- Match References to Papers
- Extract Authors
- Extract Documents
- Extract Keywords
- Extract Document Sources
- Extract Authors by Year
- Extract References by Year
- Extract Original Author Keywords by Year
- Extract New ISI Keywords by Year
- Extract Authors by Year for Burst Detection
- Extract Documents by year Year for Burst Detection
- Extract Original Author Keywords by Year for Burst Detection
- Extract New ISI Keywords by Year for Burst Detection
- Extract References by Year for Burst Detection
- Extract Longitudinal Summary
- Extract Co-Author Network
- Extract Author Citation Network
- Extract Document Citation Network (Core Only)
- Extract Document Citation Network (Core and References)
- Extract Document Source Citation Network (Core Only)
- Extract Document Source Citation Network (Core and References)
- Extract Document Co-Citation Network (Core Only)
- Extract Document Co-Citation Network (Core and References)
- Extract Document Source Co-Citation Network (Core Only)
- Extract Document Source Co-Citation Network (Core and References)
- Extract Author Co-Citation networkNetwork
- Extract Author Bibliographic Coupling Network
- Extract Document Bibliographic Coupling Network
- Extract Document source Source Bibliographic Coupling Network
- Extract Weighted Document-Document Network
NSF
- Merge Identical NSF People
- Extract Investigators
- Extract Awards
- Extract Organizations
- Extract Co-PI Network
General
- Create Merging Table
- Merge Entities
- Custom Table Query
- Custom Graph Query
- Extract Raw Tables from Database
Generic-CSV
- Extract Co-Occurrence Network
- Extract Bipartite Network
- Extract Co-Entity Occurrence Network
- Extract Table
...
Networks
- Extract Timestep
- Extract Top Nodes
- Extract Nodes Above or Below Value
- Remove Node Attributes
- Delete High Degree Nodes
- Delete Random Nodes
- Delete Isolates
- Extract Top Edges
- Extract Edges Above or Below Value
- Remove Edge Attributes
- Remove Self Loops
- Trim by Degree
- Snowball Sampling (N Nodesnodes)
- MST-Pathfinder Network Scaling
- Fast Pathfinder Network Scaling
- Pathfinder Network Scaling
- Node Sampling
- Edge Sampling
- Symmetrize
- Dichotomize
- Multipartite Joining
- Lowercase, Tokenize, Stem, and Stopword Text
- Slice Table by Time
- Merge 2 Networks
...
Topical
Networks
Unweighted & Undirected
- Node Degree
- Degree Distribution
- K-Nearest Neighbor (Java)
- Watts-Strogatz Clustering Coefficient
- Watts Strogatz Clustering Coefficient over K
- Diameter
- Average Shortest Path
- Shortest Path Distribution
- Node Betweenness Centrality
- Weak Component Clustering
- Global Connected Components
- Extract K-Core
- Annotate K-Coreness
- Blondel Community Detection
- HITS
...
- Random Graph
- Watts-Strogatz Small World
- Barabási-Albert Scale-Free
- Can
- Chord
- Hypergrid
- PRU
- TARL (Topics, Aging and Recursive Linking)
- Discrete Network Dynamics (DND)
- Evolving Network (Weighted)
...
Visualization
General
- GnuPlot
Temporal
Geospatial
- Geo Map (Circle Annotations)
- Geo Map (Colored-Region Annotations)Proportional Symbol Map
- Choropleth Map
Networks
- GUESS
- Gephi
- GnuPlot
- Radial Tree/Graph (prefuse alpha)
- Radial Tree/Graph with Annotation Annotations (prefuse beta)
- Tree View (prefuse beta)
- Tree Map (prefuse beta)
- Balloon Graph (prefuse beta)
- Force Directed with Annotation (prefuse beta)
- Kamanda-Kawai (JUNG)
- Fruchterman-Reingold (JUNG)
- Fruchterman-Reingold with Annotation (prefuse beta)
- Spring (JUNG)
- Small World (prefuse alpha)
- Parallel Coordinates (demo)
- LaNet
- DrL(VxOrd)
- Specified (prefuse Prefuse beta)
- Circular Hierarchy
- Circular (JUNG)
- Bipartite Network Graph
Simulation
Single-Population
Network
R
- Create an R Instance
- Run Rgui
- Import Send a Table Into to R
- Export Get a Table From from R
Scientometrics
- Remove ISI Duplicate Records
- Remove Rows with Multitudinous Fields
- Detect Duplicate Nodes
- Update Network by Merging Nodes
- Extract Directed Network
- Extract Paper Citation Network
- Extract Author Paper Network
- Extract Co-Occurrence Network
- Extract Word Co-Occurrence Network
- Extract Co-Author Network
- Extract Reference Co-Occurrence (Bibliographic Coupling) Network
- Extract Document Co-Citation Network
Readers
Facebook Reader
Flickr Reader
Google Citation Reader
- Google Citation User ID Search Algorithm
- Attach Citation Indices from Google Scholar
- Attach Citation Table from Google Scholar
Twitter Reader
XML to CSV Converter
Algorithms organized alphabetically
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