Below is a list of the algorithms created so far from each CNS CIShell-powered tool. There are two lists, one organizes the algorithms by their function in the tools and the other organizes the algorithms alphabetically. Some pages are currently somewhat sparse, as of March 2011.
If you would like to view an index of algorithms in a particular CNS CIShell-powered tool, see the Sci2 Algorithm Index, the NWB Manual, or the EpiC Manual.
Source code for these algorithms is browsable in the CNS Center repository, see Document & Developer Resources (direct link to repository is currently down. Should be available soon as of March 2011).