Space Details:

Key	SCI2TUTORIAL
Name	Sci2 Manual
Description
Created by	mwlinnem (Nov 09, 2010)

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Science of Science (Sci2) Tool Manual
- Home
- 1 Introduction
- 2 Getting Started
  - 2.1 Download, Install, Uninstall
  - 2.2 User Interface
  - 2.3 Data Formats
    - 2.3.1 Database Schema
      - ISI Database Tables
        
        ADDRESS
        
        AUTHORS
        
        CITED_PATENTS
        
        CITED_REFERENCES
        
        DOCUMENT
        
        DOCUMENT_KEYWORDS
        
        DOCUMENT_OCCURRENCES
        
        EDITORS
        
        ISI_FILES
        
        KEYWORD
        
        PATENT
        
        PERSON
        
        PUBLISHER
        
        PUBLISHER_ADDRESSES
        
        REFERENCE
        
        REPRINT_ADDRESSES
        
        RESEARCH_ADDRESSES
        
        SOURCE
        
        How Abbreviated Names are Parsed
        
        How Full Names are Parsed
      - NSF Database Tables
        
        AWARD
        
        FIELD_OF_APPLICATION
        
        NSF_FILE
        
        ORGANIZATION
        
        PERSON (NSF)
        
        INVESTIGATORS
        
        PROGRAM_MANAGERS
        
        PROGRAM
        
        AWARD_OCCURRENCES
        
        AWARD_FIELD_OF_APPLICATIONS
        
        INVESTIGATOR_ORGANIZATIONS
        
        PROGRAM_NAME_AND_ELEMENT_CODES
        
        PROGRAM_REFERENCE_CODES
      - Publication Database Tables
        
        Bridge Tables
        
        Authors Table
        
        Cited Citations Table
        
        Cited Patents
        
        Document Keywords Table
        
        Document Occurrences Table
        
        Editors Table
        
        Publisher Addresses Table
        
        Reprint Addresses Table
        
        Research Addresses
        
        Core Tables
        
        Addresses Table
        
        Citations Table
        
        Documents Table
        
        Files Table
        
        Keywords Table
        
        Patents Table
        
        People Table
        
        Publishers Table
        
        Sources Table
    - 2.3.2 Generic Publication Schema
  - 2.4 Saving Visualizations for Publication
  - 2.5 Sample Datasets
  - 2.6 Sample Workflows
  - 2.7 Visualization Color and Font Specification
  - 2.8 Visualizing Data with Sci2
- 3 Algorithms, Tools, and Plugins
  - 3.1 Sci2 Algorithms and Tools
  - 3.2 Additional Plugins
    - Bipartite Network Graph
  - 3.3 Load, View, and Save Data
  - 3.4 Memory Allocation
  - 3.5 Memory Limits
  - 3.6 Property Files
  - 3.7 Log Files
  - 3.8 Header Map Files
- 4 Workflow Design
  - 4.1 Overview
  - 4.2 Data Acquisition and Preparation
  - 4.3 Data Loading and Preparation
  - 4.4 Summaries and Table Extractions
  - 4.5 Statistical Analysis and Profiling
  - 4.6 Temporal Analysis (When)
  - 4.7 Geospatial Analysis (Where)
  - 4.8 Topical Analysis (What)
  - 4.9 Network Analysis (With Whom?)
  - 4.10 Modeling (Why?)
- 5 Sample Workflows
  - 5.1 Individual Level Studies - Micro
    - 5.1.1 Mapping Collaboration, Publication, and Funding Profiles of One Researcher (EndNote and NSF Data)
    - 5.1.2 Time Slicing of Co-Authorship Networks (ISI Data)
    - 5.1.3 Funding Profiles of Three Researchers at Indiana University (NSF Data)
    - 5.1.4 Studying Four Major NetSci Researchers (ISI Data)
    - 5.1.5 Studying Directory Structures (Hierarchical Data)
    - 5.1.6 Social Network Analysis (Facebook Data)
  - 5.2 Institution Level Studies - Meso
    - 5.2.1 Funding Profiles of Three Universities (NSF Data)
    - 5.2.2 Mapping CTSA Centers (NIH RePORTER Data)
    - 5.2.3 Biomedical Funding Profile of NSF (NSF Data)
    - 5.2.4 Mapping Scientometrics (ISI Data)
    - 5.2.5 Burst Detection in Physics and Complex Networks (ISI Data)
    - 5.2.6 Mapping the Field of RNAi Research (SDB Data)
    - 5.2.7 Visualizing VIVO Data
  - 5.3 Global Level Studies - Macro
    - 5.3.1 Geo USPTO (SDB Data)
    - 5.3.2 Congressional District Geocoder
    - 5.3.3 Geo NSF (SDB Data)
- 6 Sample Science Studies & Online Services
  - 6.1 Science Dynamics
  - 6.2 Local Input-Output and ROI Studies
  - 6.3 Local and Global Science Studies
  - 6.4 Modeling Science
  - 6.5 Accuracy Studies
  - 6.6 Databases and Tools
  - 6.7 Interactive Online Services
- 7 Extending the Sci2 Tool
  - 7.1 CIShell Basics
  - 7.2 Creating and Sharing New Algorithm Plugins
  - 7.3 Tools That Use OSGi and_or CIShell
- 8 Relevant Datasets and Tools
  - 8.1 Datasets
  - 8.2 Network Analysis and Other Tools
- 9 References
- 10 Sci2 FAQ
  - Changing System Locale
- Appendix 1 Introduction to Networks
- Appendix 2 Glossary
- Appendix 3 CIShell Algorithms
- Appendix 4 Date Format
- Appendix 5 Sci2 Release Notes
  - 4.1 Sci2 Release Notes v0.5 alpha
  - 4.2 Sci2 Release Notes v0.5.1 alpha
  - 4.3 Sci2 Release Notes v0.5.2 alpha
  - 4.4 Sci2 Release Notes v1.0 alpha
  - 4.5 Sci2 Release Notes v1.1 Beta
  - 4.6 Sci2 Release Notes v1.2 beta
  - 4.7 Sci2 Release Notes v1.3
  - 4.8 Sci2 Release Notes v2.1.0